Archive for the 'scholarly communication' category

Misunderstanding ArXiv

Jan 30 2012 Published by under scholarly communication, STS

The physics, astro, CS, math and related fields e-print server, ArXiv, is often misunderstood and misrepresented. Specifically, it's often represented as a place anyone can send any article in any state.

Anyone: users must be endorsed by another user. Endorsers are active submitters in the same area. This could be a fairly low bar, but it is there.

Any article: articles can be rejected or reclassified. Articles are expected to be journal quality. There are moderators to make these calls.

Any state: articles are supposed to be done. Read this interesting discussion on AstroBetter. Even if the rules don't say it, the norms in one of the subject areas might.

Share

2 responses so far

In favor of the HTML full text (am I the only one?)

Dec 20 2011 Published by under publishing, scholarly communication

Chatting with a society publisher last week they told me that it's hardly worthwhile doing anything with the html page because maybe only 10% of readers use it!  I guess I'm in that 10%.

Over the years I've had so many problems with pdfs. They crash. They crash Adobe, they crash the browser, they crash the computer... and they can (and sometimes do) have malware embedded so pose a security risk. MPOW, like many other security-minded organizations, has it set up so all pdfs must fully download and be scanned before displaying. So this creates lots of temporary files to clog up the computer and it also makes irrelevant all those stupid frames publishers put around their pdfs.

Granted, when I need to print, I want the pdf. I use the pdf for my own reading that I want to suck into Mendeley.  My customers typically want pdfs.

But when I'm reading out of vague curiosity or browsing to pick out a fact (that is, if they don't pull out the tables and graphs separately), or checking to see if the article is any good... it's all html. If I'm going to read the whole thing, I'll frequently use the Readability plugin (I'm getting old).

So don't do away with the html, please, for me? And Sage?  Please add html full text (thank you in advance)!

Share

One response so far

OSTP call for public comment on access to data and publications from government funded research

via Joe Hourclé on the Earth-Space Science Informatics listserv (who got it from Clifford Lynch on the CNI listserv)

The U.S. Office of Science and Technology Policy  has issued two calls for public comment. One deals with policies for access to journal articles reporting on federally funded research. This is somewhat similar to a call that was issued last year. The second covers policies related preservation, access and reuse of data created as part of federally funded research programs...

These calls can be found at

http://federalregister.gov/a/2011-28621  (data)

and

http://federalregister.gov/a/2011-28623 (publications)

This is a time when your voice can be heard in government. It's particularly important for those of you (cough chemists and physiologists cough) who are part of societies that are spreading hate and discontent about the topic instead of communicating rationally (like, for example, the physics societies). Please consider providing a comment.

Share

No responses yet

New, now scientists can use blogs to talk to other scientists about science!

I collect articles on scientists using blogs and twitter. Mostly because it’s relevant to my dissertation, but also because I find them interesting. You can see a listing here: http://www.delicious.com/cpikas/meta_science_blogging (used to be displayed on my UM page, but that broke in the transition).

So one of these articles that I saw tweeted by about five people at the same time is Wolinsky, H. (2011). More than a blog. EMBO reports 12, 1102 - 1105. doi:10.1038/embor.2011.201 .

Of course it starts with the arsenic life discussion. It talks about the immediacy of the blog reaction and the tone of the discussion on the blogs.  Overall a nice article.

I think the subtitle of the piece is unfair. It acts like the title of this post when the article itself is more about where blogs have evolved to right now. There are a lot of differing experiences with blogs and differing uses, some of which have always been talking shop.

Share

4 responses so far

Authorship in various fields

Sep 17 2011 Published by under collaboration, scholarly communication

DrugMonkey's been on an interesting run on order of authorship (his view is distinctly from his discipline as in Econ and some other fields alphabetical order is the norm)... so this reminds me of a couple incidents at work.

One project I'm on mostly has people from the geosciences or planetary sciences area. Abstracts sent to AGU have everyone on the team's name on them. The presenter is the primary author, but we're all collaborators even if the piece emphasizes something that's not really on our part of the project. The presenter might not be the first author, btw, as each first author can only submit one thing.

Another project just submitted a conference abstract and I didn't get the opportunity to co-author, even though my role has probably been a lot larger and the team is a lot smaller. Also, I wrote about 60% of our project documentation and my name wasn't added as an author (only the person who edited my work and the person who wrote the other 40%). I, of course, raised a fuss and then got my name put on it... but sigh. This is in an area of CS.

Share

No responses yet

Shaking it Up: our ASIST 11 Submission

Jun 01 2011 Published by under Conferences, scholarly communication

A bunch of us answered Heather Piwowar’s call on Twitter to submit a panel for the annual meeting. Here’s the result:

Shaking it up: embracing new methods for publishing, finding, discussing, and measuring our research output

Alex Garnett, Heather Piwowar, Kim Holmberg, Jason Priem, Christina K. Pikas, and Nicholas Weber

There are a number of cool things about this session. First we’re going to have an ice breaker that gets people moving around an asserting opinions on the topic at hand. Second we’re going to have fast presentations from the panelists. Third, we’re going to have people fill out surveys and that will become part of a poster in a later session.

Should be fun, I hope the reviewers agree.

Share

No responses yet

Blogs are not dead yet

Various assorted pundits have been heralding the death of the blog as a science communication medium for at least five years, probably longer. Blogs aren’t dead, indeed, as far as I can tell, they are now in a revival period in which their true utility and value is becoming more obvious.

This blog post was prompted by a post on Scholarly Kitchen in which the blogging scientist (or science-trained publisher) blogs about how scientists don’t blog (again). David Crotty titled his post: Not With A Bang: The First Wave of Science 2.0 Slowly Whimpers to an End. Crotty views the attempted monetization of the science blogosphere as the crest of the first wave. He discusses several examples of for-profit companies that exuberantly jumped into the blogosphere and other science 2.0 things but have since pulled back.  I would assert that the attempted monetization and commercialization of science 2.0 is external to the movement and really a distraction from the slow growth phase of the innovation adoption curve.

First, all of the bloggers now on a for-profit host started on wordpress.com, blogger, or some similar service. They garnered enough interest to be attractive to a company that hoped to make money on page views. Many of the early adopters moved over from updating static websites, keeping newsletters, participating on newsgroups, or participating on bulletin boards. They may have continued to participate in these platforms, but saved longer discussions for their blogs. Otherwise, they might have used their blogs to re-share links they would normally have put on a static website or on the young delicious but that weren’t getting enough visibility. This was the first wave of pioneers.

The idea that a media company could get inexpensive talent by mining the blogosphere came later. In the beginning the primary for-profit (or for loss, unfortunately) was ScienceBlogs. Even at its height, ScienceBlogs was never more than a tiny part of the science blogosphere. Its limited size made it more exclusive and more watched. Others who did not know about the rich online life of scientists saw ScienceBlogs as the entire science blogosphere. Seed Media told a good story and made it look profitable so others wanted to get in. I’m not sure about Nature, but I’m sure they were clear that supporting blogs would not be a profitable effort. I think the goal for them was to support science and to get scientists to spend more of their time online looking at Nature Publishing sites. It’s not important.

When some of the shine wore off, and some of the bloggers left, the rest of the blogosphere got more attention. I still feel that the rest of the blogosphere doesn’t get the attention it deserves, but as with everything people do, there’s a long tail.

In the past few months, some of the long-time bloggers went into a blogging funk (including yours truly). At the same time, additional scientists started blogs. Some bloggers went on hiatus, some quit, but others started, and some who quit earlier came back. Societies and non-profits have stepped up to support science blogging. This is a great idea as the purpose of the societies is to support science communication in their subject area.

Some who have discussed the death of blogs originally said that wikis would take over. If you’ve used a wiki, you know they are very good for certain things, but there’s almost no overlap with what blogs are good for. Likewise, many people thought Twitter would replace blogs. Using twitter can be an art form- the concise nuggets of information or questions in under 140 characters. Recent it’s become more and more clear that the long form not only still has value, but is still needed. It’s needed to provide context and to tell the whole story.

What about the lack of or surfeit of journalism-trained bloggers. Which is it? Does it matter? The science blogosphere has always been made up of practicing scientists, people working in some area adjacent to science with some level of science training (like librarians), and non-scientists who are interested in science. There are bloggers in each of these varieties who communicate well and are good at telling a story. It’s very welcome that a lot of the very talented science journalists have taken up blogging. For them it’s not a longer form but often a shorter form. I don’t think there are too many or not enough nor do I think that they are any more important or valuable than the scientists who blog. Nor do I think that all members of the science blogosphere should have journalism training or strive to journalistic standards.  We could all stand to write better, but we’re all writers. Scientists have to write for their profession so blogging really isn’t that much of a stretch.

As for the question of culture and technology. They co-evolve. Does the science blogosphere change science or science culture? Does science culture determine what technologies will be used and how? Yes. Both. All the time. Is there a lot of inertia? Oh yes.

Share

6 responses so far

Early thoughts about a collaborative meeting organized by mpow

Apr 15 2011 Published by under collaboration, scholarly communication

This will hopefully be reported in a while in some peer reviewed venue or at least a conference, but I wanted to get some of my thoughts down early on.  I’m part of an internally funded research project at MPOW (not linked from here, but you can easily google me) that is incredibly ambitious and has some risk. What are we trying to do? We’re trying “To provide actionable knowledge to decision makers, build capacity for communicating ideas, and create resilience through discovery.” That’s a pretty broad statement. Here’s the nutshell version: get scientists and decision makers together to address issues related to climate disruption, its mitigation, and adaptation to it. Our specialty is systems engineering, so that’s our approach.

The first way we’re starting on this is to hold a few conferences to develop prioritized lists of needs in a few key areas and to start building a community of interest supported by an online community. The conferences aren’t the standard sit-there-and-be-lectured-at type of thing. They involve breakout sessions with read aheads, polls, surveys, online comments, and a notetaker recording spoken discussion. The first of these was held this week with climate scientists and public health researchers and practitioners. It was pretty intensive with scheduling from 7:30am to as late as 8pm and with all the breakfasts, lunches, and one dinner provided there at the meeting location.

My concerns were facilitating communication across different areas of science and to decision makers as well as how a software tool can support this type of meeting. I really didn’t get to help much with the communication bit, unfortunately, but I did work pretty hard on the platform, alongside a web developer, a couple of software engineers, a noted psychologist who studies collaboration in science, a cosmologist, an astronomer, an atmospheric physicist, and others.

There are many platforms that did some of the things we wanted to do, but other future work is to provide a type of virtual observatory for climate data, so we were looking for something very flexible. We were also working on a shoestring, so we couldn’t just outsource a consultant to build what we needed. What we ended up with is a Drupal 6.2 installation. There were some plenary sessions but it’s the breakout sessions and the digital library that are probably the most interesting. For the breakout sessions, we had a session description, a bio of the moderator, room for notes from the note taker (with a scroll bar), and a forum-like threaded place for comments. The comments was also where files could be uploaded. In the sidebar, we had a listing of the accounts who were looking at the page (custom built), a list of the files that had been uploaded (custom built), and a place for polls. The concept was that the moderator would introduce the topic, but the conversation would involve all attendees (we expected up to about 20 per room). Attendees could share an image or a file to illustrate their point. The comments would be used to get input from the shy participants. The polls could be used to establish a starting place or rank whatever came out of the discussion. (I’m not including an image on purpose – I don’t have a blank one to show).

The digital library is pretty cool. The module we’re using will fill in the details if you give it a PMID. Since this first conference was about public health, we used that quite a bit. It also allows us to use the node number to quickly add a footnote or the whole citation wherever we want with a short macro.

As you might expect, there was a learning curve not only in using the site, but also in understanding what the site was useful for. Some of the moderators were all about getting the most out of the site while others didn’t get it or were afraid it would be distracting. In addition to the notetaker, each breakout had a facilitator to help everyone get logged in, to upload files, and to create polls on the fly. I was the facilitator for 4 sessions with 3 different moderators. Each session was different. Creating a poll to rank the 8 things that came out in discussion was tough to do on the fly, even for those who type fast.

The attendees, once they got used to not being on the internet (no checking e-mail!), and got logged in, seemed to do ok. A lot of them said they enjoyed that part of it. One part that got great feedback was the feedback session itself! That was essentially a threaded forum, but then we discussed the feedback and I took notes.

Attendees would be interested in receiving an occasional e-mail, but didn’t seem to really want to contribute to the site really. It was also suggested that we have regular virtual meetings using the site.

Anyway, lots more detail needed, lots more to say, but that’s it for now.

Share

No responses yet

An early image of the AGU10 twitter archive

I used TwapperKeeper to capture the AGU10 twitter archive. TwapperKeeper via Summarizr gives some general stats but I was curious more about the connections. At first I thought I could take the from to columns directly from the export and put them into an SNA package, but alas, the to field only covered tweets that started with @. So that leaves out all of the RT@ messages as well as the mentions where the @ is somewhere embedded.  I was despairing a little bit about it, and even got ready to pull out the Perl and regex, but my dear husband was like why not do text to columns at the @ symbol. Well, why not indeed?  So this dataset only has one @ in it. If more than one person was @-ed, only the first is pulled out right now. I might do something different later.

Anyhow, so I took that and I pasted it into NodeXL – an add-in for Excel 2007 that does SNA. But I was sort of having trouble working the visualization – mostly my inexperience probably. So I exported from there in DL format, imported into UCInet and then opened in NetDraw. There’s lots to see and do yet, but I thought this little bit was interesting:

agu10 mentions replies largest component 781 sized in degreeThis is the same license as the rest of my blog (cc-by), but it’s just a first pass so you might want to keep that in mind if you want to redistribute.

This is the largest component (components are pieces of the graph that are connected to each other but not the rest of the graph). It has 781 nodes. The rest of the components are like 3-5 nodes on average. The nodes are sized by inDegree (how many people tweeted @ them with the agu10 hashtag). What I find interesting about this is the role of institutional bloggers. Only one of the labels is clear but the two largest nodes are NASA, top, and theAGU, bottom. The medium sized one above NASA is NASAjpl. It’s interesting about the institutional bloggers, but also that they really seem to cluster in two camps. Not that many people tweeted @ both.

Certainly, I’m curious about what’s in common with the people in one camp or the other and what the content of the messages is. But this is an extremely early look.

UPDATE: Upon further inspection it became clear that there was an issue with upper and lower case - Twitter isn't sensitive, but my SNA packages are. Nothing I've said above really changes, there are just additional nodes connected to NASA and theAGU.

Share

One response so far

scio11: Alt-metrics

Jason Priem, Paul Groth, Jason Hoyt, Martin Fenner

The standard scholarly communication system – journal articles – and the shadow system like around water coolers, in journal clubs, in the hallways at conferences. Now that some of that is being done online, we can track and use it as a measure of impact.

Advantages:

  • fast
  • context
  • can look at a lot more scholarly products than just journal articles

Would you put the number of times a tweet of yours has been re-tweeted on your CV? Comments from the audience: can you make the altmetrics look official? I’m tenured so I can play, but I’d put it on my cv if a very obscure tutorial video got hits on youtube. Someone who was recently getting tenured didn’t put it in her package. Another comment – my university has been around for 150 years, but it only just now started allowing patents in the tenure package – I can’t imagine ever putting even more modern things in!

Comments on papers – can you get some sort of reputation or credit for that. Metrics are relevant to the currency of scholarship – in biochemistry one thing, but in filmmaking maybe film views

no sentiment analysis in citations – infamous vs. famous, but that’s always been the case. There are semantic annotation efforts.

There’s also the fruitbat problem (very popular article on Plos because – um – interesting topic) – maybe with multiple topics

There also has to be a temporal aspect to the metrics and you could annotate that to point to the news story that lead to the interest.

Many things we could measure, which to prioritize? Hoyt would prioritize whatever could displace the JIF.

An alt metric is to make available the details to recreate the experiment.

What tools? readermeter (takes Mendeley data). Profiles (add your own papers and then see statistics on them – can make your pre or post print pdf available)

impacts at conferences? Paul – program committee membership, slides from slideshares. people who use slideshare are not the people on the program committees.

citations – set up a research center, first papers from their research were 2 years later, citations quite a bit after that. Need some other metrics that will be faster to show impact of science to science and of outreach efforts.

Doesn’t always and shouldn’t always correlate with traditional measures because we do more things with articles

Paul has done some things to look at what your network looks like and what your publishing looks like over time.

Mendeley is looking at reading time, heatmaps (parts of papers where are highlights), correlation of readership with f1000 scores.

finding interdisciplinary metrics is very hard – bcs journals and assigning disciplines isn’t straightforward – these altmetrics can help

Share

No responses yet

Older posts »

Bad Behavior has blocked 86 access attempts in the last 7 days.