The manuscript cover letter

(by drugmonkey) May 10 2012

There are, to my thinking, two versions of the cover letter you send with a manuscript.

1)  Short 'n Sweet: Dear Editor, this is  about blah, de and blah which is significant because zippede. I think this will interest your readers, Sincerely, R. E. Squirrel

 

2) The Fluff Job. This is the one that goes on for two pages about how awesome the paper is and why it totally is new and solves cold fusion and shit like that.

 

I have always been a Short and Sweet kind of guy.

 

It has only recently come to my attention that people go ON with their cover letters.

 

WTH?

 

Do any of y'all with Associate Editor or EIC type experience read those long winded letters or do you just go straight to the Abstract?

 

 

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28 responses so far

Sink or swim

(by drugmonkey) May 10 2012

Approximately how much should the PI and postdoc or grad student attend meetings together versus separately?

I think the together part is obvious and should be the majority of the time. The PI is supposed to be introducing the trainee around.

But flying solo can be great for independence.

 

The big shottes *have* to talk to you if the PI isn't at the meeting. So I'd definitely be okay with a handful of meetings where the trainee is there without the PI.

Making it habitual, however, is MentorMalpractice.

 


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15 responses so far

Finished story, discussion points or "huh, that's funny.."

(by drugmonkey) May 10 2012

Which kind of poster do you prefer to see?

Which kind do you present?

Me, I don't want to see a finished story. If it is that wrapped up, meh, I can wait for the peer reviewed version to come out. I want to grapple with something new...and preferably *puzzling*.

The best possible outcome of a meeting presentation would be if three interested labs went home, took on an aspect of the puzzle (even if only a replication) and by year's end there were four new papers in print.

That's how meeting presentations should work.

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8 responses so far

The worst drivers on US roads are

(by drugmonkey) May 08 2012

The demonstrably worst drivers are 1) Beemer pilots, 2) Volvo drivers of the mom demographic, 3) jacked up pickemup trucks with trucknutz idiots and 4) minivan drivers. Lately the ecophreaks driving Prii are making a *strong* showing. But I suspect that is either the dope or the conversion of #2s to Prii.

Discuss.

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42 responses so far

on "temperament"

(by drugmonkey) May 07 2012

no seriously....go to the Wikipedia on "dog fighting breeds". Start picking dogs and page down to the "Temperament" link for them all.

"strong character". "suspicious of strangers". "suited for very experience dog owners". "take a socially dominant role with other dogs". "If poorly socialized or trained, it can become especially territorial and aggressive."

Have you ever seen such a bunch of denialist, dog-bothering crapola? So many ways to try to avoid saying "Gee, d'ya think maybe breeds bred for fighting each other, for guarding medieval potentates, for 'protection', for 'bull-baiting' (wtf), for taking out wolves that are attacking sheep flocks, for catching slaves*...MIGHT BE FUCKING DANGEROUS???!!??? What are you, stupid?"

At least this one is honest:

renowned for sneaking up on intruders as opposed to first alerting them of its presence...this guardian breed needs extensive proper socialization to learn to accept strangers, especially within the home; without proper early socialization and training, these dogs are likely to become aggressive towards strangers and unfamiliar dogs. Like with other breeds, forceful training methods, "alpha roles", and a general "dominance" mentality will not work with these dogs, especially since it is difficult to try to physically dominate a dog that is nearly as large as an adult human;

of course, the inevitable BS apologetics:

one should prevent problems before they happen by using positive training methods, beginning socializing early, and continuing socialization throughout life.

so, when it DOES bite someone's hand off, well, that was just a failure of "continuing socialization throughout life" you know. Ooopsies, bad owner.

*ok, that one's extinct thank goodness!

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17 responses so far

Pit bulls are inherently dangerous

(by drugmonkey) May 04 2012

According to the Maryland Court of Appeals.

A new ruling makes it easier for anyone attacked by a pit bull or pit bull mix in Maryland to take legal action against the dog's owner.

The Maryland Court of Appeals ruling declares pit bulls as a breed are "inherently dangerous," and the owner of a pit bull or a cross-bred pit that attacks is strictly liable for damages, as is any landlord who rents to a pit bull owner.

From this, which appears to be the decision, we get more clarity:

Upon a plaintiff’s sufficient proof that a dog involved in an attack is a pit bull or a pit bull
cross, and that the owner, or other person(s) who has the right to control the pit bull’s
presence on the subject premises (including a landlord who has a right to prohibit such dogs
on leased premises) knows, or has reason to know, that the dog is a pit bull or cross-bred pit
bull, that person is liable for the damages caused to a plaintiff who is attacked by the dog on
or from the owner’s or lessor’s premises. In that case a plaintiff has established a prima facie
case of negligence. When an attack involves pit bulls, it is no longer necessary to prove that
the particular pit bull or pit bulls are dangerous.

Sick of reading these news accounts? I am. Try it yourself. Google pitbull attack on any given day.

UPDATE: For those that want to play "Pitbull Denialism" along with me, download your handy DINGO card.

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230 responses so far

NCI publishes their grant funding outcome for FY2011

(by drugmonkey) May 04 2012

This is huge. Previously the only IC that, to my knowledge, made their funding data available was the NIGMS. We grant geeks were big fans, even those of us who don't seek funding from that particular Institute of the NIH.

Well, apparently NCI has joined the party....I do hope this is a sign of things to come at other ICs. Do note that this comes in the wake of some announced policy changes from NCI head Varmus which caused some consternation. Check the comments over at writedit's pad. I concluded that this was just business as usual (i.e., as already practiced by numerous other ICs).

meh. he's actually talking normal stuff here. I read him as saying the payline is 7%ile (he says priority score but I suspect he means percentile) and then, as is totally normal business as usual for many ICs, he's talking about the gray zone wherein they violate the strict order of review for various Programmatic reasons.

Nothing to see here, save 7%ile is the lowest payline I've heard mentioned as such...

Given such practices, however, we are all intensely curious about the mysterious grey zone behavior. I have asserted in the past that I think the NIGMS data very likely stand as proxy for most, if not all, other ICs in the broad strokes. (The reason is that they dovetail nicely with the tiny bits of info that sneak out around the corners for the other ICs, if one is inclined to follow the breadcrumbs.) Importantly, the grey zone pickups are not randomly distributed. They are more likely the closer the score is to the payline. Well, now I have another data point..

First up, the Experienced Investigator graph:

yep. looks very familiar.

ok, how about the New Investigators?

hmm, notice that percentile skew? Now let's see about the ESI folks:

Yep.

Okay, so what? Well I think this should continue to motivate people to keep the heat on whatever NIH representative happens to be listening. POs or those poor, poor higher-ups that have to get up in front of a room of agitated PIs and put a happy face on things.

My point is that this skew shows that study sections are not responding to the clear intents and desire of the NIH. I.e., to treat newb investigators more fairly (or "generously" one might argue). And just like with any other initiative of the NIH with respect to review, I assume that they are serious about it. They've shown this, but changing ESI paylines, making greyzone pickups more frequently, etc. So why not fix the problem at the point of review?

1) First off, you would think that both Program and the reviewers would see that their refusal to treat ESI apps in the mix with the rest decreases their input even further. We all have the experience that the tightest discussion and the most agonized decision making as an assigned reviewer comes at the perceived payline. For the obviously top applications, all we're looking to do is to make an obvious argument. For the ones that are going to get triaged, or nearly triaged, well the tendency is to just hit the high points, slap on a few StockCritiques and assign a score. Even if the app is discussed way down in ~30-40%ile land, there isn't going to be so much argument about the exact score range. The other reviewers aren't going to be so engaged trying to decide which end of the post-discussion score range they should go with. Not like they will with applications that appear to be right around the perceived payline.

2) Next, this is a symptom of a larger problem. I.e., for the NIH trying to get the review panels on board with their broader goals. Take "Innovation". Despite a lot of hoopla in launching a new review approach, the data showed (thanks again, NIGMS) that review outcome was driven mostly by the same old, same old. I.e., Significance and Approach. The same problem applies if the ICs choose to fix this by scrutinizing the grey zone critiques for the ones that seem most "Innovative"....panels haven't discriminated the pool very well on that factor. More variance, more influence of the PO.

3) I think a lot of reviewers have no concept of these broader statistical trends. They are unaware of the data, blind to study section cultural influences and generally just haven't thought things through very well. It may be that some of these people really believe in a different type of outcome for their study section and their subfield. But they have no notion of where the problem lies, nor that it is fixable.

It is most assuredly a fixable problem. I have two themes that I've pursued on the blog. First, education of study section members with respect to what they are doing. The funding data, such as the NCI and NIGMS charts posted and linked above, is the start of this. I'd like to see these outcomes be made available to study section reviewers, right down to the level of their own review panel. Second, the solution of competing biases. Anytime there is human judgement, there is bias. Anytime. The only solution that offers high confidence of having an effect is the competition of biases. This is why the panels are explicitly representative of geography, sex, ethnicity and institution type/size. What they are not representative on is the Newb/Experienced PI axis. (Also, one might argue that the Innovative!!!1111!!/Conservative PI axis has some skew, but that's a chat for another day.)

@boehninglab was skeptical that there was any point in talking about these issues. I, naturally, am of the opinion that the surest way to prevent things you want to see happen is to remain silent. Sure, there are never any guarantees that you position will change anything at the NIH, but if you don't say something then there is a guarantee you won't be heard.

So comment on the NIH sites, in this case the NCI one. Let them know how you see their behavior and why it is good or bad for the science in your subfield.

[h/t: @salsb]
__
ps. check the NCI page for the R21 data, also interesting.
update: pps, PhysioProf noted that the score distribution for Experienced/New Investigators is much more similar for R21s than for R01s. Interesting to consider why that might be so. I would point to the "starter grant" bias....

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23 responses so far

Cannabis hyperemesis: A brief update

(by drugmonkey) Apr 28 2012

Dirk Hanson's post on cannabis hyperemesis garnered another pertinent user comment:

Anonymous said...

My son suffers from this cannabinoid hyperemesis. At this moment he is here at my home on the couch suffering. I have been up with him for 3 days with the vomiting and hot baths. He says this time its over for good. This is our third bout. The first two time we went to ER, they put him on a drip to hydrate him, and gave him some pain medicine and nausea medicine. After a few hours he went home and recovered. This time we went to Urgent Care, put him on a drip, pain med, Benadryl, and Zofran. He felt better. That was yesterday, today we are right back with the nausea, but the Zofran limits the vomiting. I'm hoping tomorrow will be much better. He hasn't eaten for 3 days. He let me take a video of him at Urgent Care before treatment, and in the video he was heaving and begging himself with tears never to smoke again. My son has smoked for 14 years.

I reviewed several case reports back in 2010. The comment thread was robust (this was originally posted at the Sb version of the blog) and there was considerable skepticism that the case report data was convincing. So I thought I'd do a PubMed search for cannabis hyperemesis and see if any additional case reports have been published. There seem to be at least 17 new items in Pubmed since the Soriano-Co et al 2010 that I referenced in the update.

One in particular struck my eye. Simonetto and colleagues (2012) performed a records review at the Mayo Clinic. They found 98 cases of unexplained, cyclic vomiting which appeared to match the cannabis hyperemesis profile out of 1571 patients with unexplained vomiting and at least some record of prior cannabis use. The profile/diagnosis was created from the prior Case Report literature that I reviewed but unfortunately I can't get access to this paper to tell you more.

The other thing to think about is the relative increase in case reports in the past year or two. As I think I commented at the time, this is typical of relatively rare and inexplicable health phenomena. The Case Reports originally trickle out...this makes the medical establishment more aware and so they may reconsider their prior stance vis a vis so-called "psychogenic" causes. A few more doctors may obtain a much better cannabis use history then they otherwise would have done. More cases turn up. More Case Reports are published. etc. It's a recursive process.

I think we're seeing this at work.

And as more cases emerge, separated in time and space, the denialist position of blaming a contaminated cannabis product (or bad bongs) gets harder and harder to sustain.

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12 responses so far

Sample R21 grants with Summary Statements from NIAID

(by drugmonkey) Apr 26 2012

As I previously noted (somewhat critically) that the NIAID had posted sample R01 grants and the corresponding summary statements. Well, they've added some R21 applications to the page.

Again, I wonder how useful this really is for most applicants. First thing you notice is that it takes a perfect score to get funded. Three of the four received 10s and the fourth limped home with an 11. Remember, the study section score range starts at 1, which is then multiplied by 10 after the voting of the entire panel is averaged.

Then there's this (emphasis added):
From the Dow summary statement's resume of discussion: "Strengths of the application include the accomplished investigator and research team, strong preliminary data, the direct doable and logical set of experiments, and the likelihood of paradigm shifting insights into meliodosis"

From the resume on the Starnbach app: "Strengths of the application include the innovative use of the novel GPS strategy, compelling preliminary data, an investigator with a strong bacterial pathogenesis research track record, an excellent and appropriate set of collaborators, and a high degree of confidence that import results will emerge from these studies."

Weis, individual critique #2: "Strong and compelling preliminary data is presented that indicate a high likelihood of success"

Well, at least NIAID is telling it like it is with these examples.....

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17 responses so far

If you can play, you can play

(by drugmonkey) Apr 26 2012

Also, if you get the GWG against the defending Stanley Cup champions in OT of Game 7 in the playoffs...well, you sure as hell can play.

Keep it classy, Bruins fans, keep it classy.

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